An Innovation that Scales Up Entire Transcriptome Single-Cell Evaluation

Scientists grab brand-new scalable technologies to capture whole transcriptomes within single cells.

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Researchers significantly turn to single-cell sequencing to address a series of organic concerns, with published single-cell information raising year over year. As its appeal rises, so does the need for modern technologies that progress scalable single-cell research studies. In February 2025, Parse Biosciences launched the Evercode ™ WT Penta and Penta 384 , a whole transcriptome single-cell analysis system that allows scientists to profile five million cells and 384 samples in a solitary run.

“A couple of years back, it would certainly be quite normal to evaluate tens of countless cells. Currently, individuals are checking out many countless cells for a great deal of researches. The inquiry ends up being, just how do you scale with that? That has truly been the entire drive for introducing the WT Penta,” stated Charlie Roco , Parse Bioscience cofounder and primary modern technology officer.

UMAP of 5 Million Mouse Nuclei. Nuclei isolated from seven flash-frozen mouse tissues were processed using Parse Biosciences’ Evercode Nuclei Fixation v3 and WT Penta kits, enabling the construction of a cross-tissue single cell transcriptomic atlas. Clustering and annotation of the 5,011,382 cells revealed a rich landscape of cell types and states across major organ systems.

Evercode ™ WT Penta permits scientists to series 5 million cells and 384 samples in a single run, helping with objective exploration of unique gene expression accounts and previously uncharacterized cell types.

Parse Biosciences

Evercode WT Penta utilizes split-pool combinatorial barcoding, which uses a special label to each private cell over a series of compartmentalization rounds using 96 -well or 384 -well plates, making it possible for unbiased expression profiling at an unprecedented scale. “A wonderful example to this is the lottery game, where somebody attracts a raffle of rounds phoned number from one to 99, and it is a mix of five different numbers that makes your number special,” clarified Roco. “It is, in concept, actually extremely similar to exactly how the innovation functions, where it is basically assigning a number within the 96 -well layers for every private cell, and through the combination of these numbers, every cell obtains an one-of-a-kind tag.”

The Penta can help scientists identify uncommon cell kinds, range up medicine displays, and include even more distinct samples to their jobs. “I believe it is actually the very best of lots of worlds, where you are scaling, but you are not massively scaling the quantity of time for individuals that need to run the experiments,” stated Johnny Yu , cofounder and chief clinical officer of Tahoe Therapeutics, that was among the initial clients to make use of the Penta upon its launch. “It has actually allowed every little thing that we are doing on the oncology medicine discovery side. It enables us to focus on our main organization demand, which is creating a lot more information in the service of discovering far better cancer treatments.”

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